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要求写个program,对一个叫OGG1.txt的文件进行分析,能输出如下的类似结果:
运行base.pl, 输出如下:
LOCUS: NM_0168260
GI: 8670535
A: 12.78%
C: 26.92%
G: 27.18%
T: 22.10%
。。。。。
OGG1.txt文件内容如下:
LOCUS NM_016826 1909 bp mRNA PRI 03-FEB-2001
ACCESSION NM_016826
VERSION NM_016826.1 GI:8670535
KEYWORDS .
FEATURES Location/Qualifiers
source 1..1909
/organism="Homo sapiens"
/db_xref="taxon:9606"
gene 1..1909
/gene="OGG1"
/note="HMMH; HOGG1; OGH1; MUTM"
CDS 318..1391
/gene="OGG1"
/protein_id="NP_058434.1"
/db_xref="GI:8670536"
/translation="MPARALLPRRMGHRTLASTPALWASIPCPRSELRLDLVLPSGQS
FRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDKSQASRPTPDELEAVRKYFQL
misc_feature 732..1094
/note="HhH-GPD; Region: HhH-GPD superfamily base excision
DNA repair protein"
polyA_site 1884
BASE COUNT 454 a 514 c 519 g 422 t
ORIGIN
1 ccctggagaa cccagaagaa cacagctgtg cgcgcccaca ggctctgggg gcgggagaag
61 ataagtcgca aggagggggc gggacctaca cctcaggaaa gccggagaat tggggtacga
121 agcggggctt tgatgacccg caaagggcga ggcatgcagg aggtggagga attaagtgaa
181 acagggaagg ttgttaaaca gcaccgtgtg ggcgaggcct taagggtcgt ggtccttgtc
241 tgggcggggt ctttgggcgt cgacgaggcc tggttctggg taggcggggc tactacgggg
301 cggtgcctgc tgtggaaatg cctgcccgcg cgcttctgcc caggcgcatg gggcatcgta
361 ctctagcctc cactcctgcc ctgtgggcct ccatcccgtg ccctcgctct gagctgcgcc
//(然后又是另一条LOCUS的开始了,偶没有全部拷贝下来,反正格式和前一条一样)
LOCUS NM_016827 1727 bp mRNA PRI 03-FEB-2001
DEFINITION Homo sapiens 8-oxoguanine DNA glycosylase (OGG1), nuclear gene
encoding mitochondrial protein, transcript variant 2c, mRNA.
ACCESSION NM_016827
VERSION NM_016827.1 GI:8670537 |
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