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菜鸟求助～如何获取1条核苷酸翻译后最长的那条蛋白序列 [复制链接]

b114213903

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巳蛇 日期:2013-11-28 09:22:59天秤座 日期:2014-10-25 15:40:452015年辞旧岁徽章 日期:2015-03-03 16:54:152015年迎新春徽章 日期:2015-03-04 09:53:172015亚冠之德黑兰石油 日期:2015-07-15 08:46:452015亚冠之平阳省 日期:2015-11-08 16:27:53白银圣斗士 日期:2015-11-14 09:58:12
11楼 [报告]
发表于 2014-08-14 08:52 |只看该作者
  1. #!/usr/bin/perl
  2. use Bio::SeqIO;
  3. use Bio::Seq;
  4. use strict;

  6. my $file=shift @ARGV or die "Usage:\t$0\tseq_file\n";
  7. my $SeqIO=Bio::SeqIO->new(-file=>"$file",-format=>"fasta") or die "Open seq_file failed!\n";
  8. my ($flag,$length,$sequence,%ids,%out)=();
  9. while(my $seq=$SeqIO->next_seq()){
  10.         (my $id= $seq->id)=~s/\_[\s\S]+$//;
  11.         my $tag=$seq->id;
  12.         my $len=$seq->length;
  13.         my $temp_seq=$seq->seq;
  14.         if(! $ids{$id}){
  15.                 $ids{$id}++;
  16.                 if($seq and $flag){
  17.                         $out{$flag}=$sequence;
  18.                 }
  19.                 $length=$len;
  20.                 $flag=$tag;
  21.                 $sequence=$temp_seq;
  22.         }else{
  23.                 if($length<$len){
  24.                         $length=$len;
  25.                         $flag=$tag;
  26.                         $sequence=$temp_seq;
  27.                 }
  28.         }
  29. }
  30. $out{$flag}=$sequence;
  31. $SeqIO->close();

  33. my $Seq_OUT=Bio::SeqIO->new(-file=>">results.fasta",-format=>"fasta") or die "Write to fasta file failed!\n";
  34. foreach my $key (keys %out){
  35.         print ">$key\n$out{$key}\n";
  36.         my $Seq=Bio::Seq->new(-id=>"$key",-seq=>"$out{$key}",-alphabeta=>"PRO");
  37.         $Seq_OUT->write_seq($Seq);
  38. }
  39. $Seq_OUT->close();
  40. print "Finished!\n";
复制代码
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cxrfly

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12楼 [报告]
发表于 2014-08-14 12:13 |只看该作者
回复 11# b114213903


    非常感谢！向您学习！
实战分享：从技术角度谈机器学习入门| 【大话IT】RadonDB低门槛向MySQL集群下战书 | ChinaUnix打赏功能已上线！ | 新一代分布式关系型数据库RadonDB知多少？
питон

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13楼 [报告]
发表于 2014-08-14 13:55 |只看该作者
如果你发现代码正好是你想要的结果, 那么, 我是蒙对了.
  1. #!/usr/bin/perl
  2. # use strict;
  3. # use warnings;

  5. @_ = split '(.)', '0.0';
  6. while (<DATA>) {
  7.     /^>(U\d+)/ or $a .= $_ and next;
  8.     $b = length $a || 0;
  9.     $1 eq $_[2]
  10.       ? ( $b > $_[1] and @_[ 0, 1 ] = ( $a, $b ) )
  11.       : ( print $b > $_[1] ? $a : $_[0] and @_ = ( $", 0, $1 ) );
  12.     $a = $_;
  13. }

  15. print length $a > $_[1] ? $a : $_[0];



  19. __DATA__
  20. >U1_1 [3 - 104]
  21. VLDLFVAHHYIRRQRARHKIGQISHFWVITQLRI
  22. >U1_2 [1 - 111]
  23. KYSIFSLRIIIFEDSELATKSVRSAIFGSSLSFGSKK
  24. >U1_3 [2 - 118]
  25. STRSFRCASLYSKTASSPQNRSDQPFLGHHSASDLKSEA
  26. >U1_4 [125 - 193]
  27. SRRSTFELGLHPPWRTWNFGHQV
  28. >U1_5 [108 - 215]
  29. KVRRDDLAGRHSSWDCTLPGGHGILVIRFDEHMALL
  30. >U1_6 [115 - 222]
  31. GVMISQVDIRVGTAPSLEDMEFWSSGLMSTWLCSKK
  32. >U1_7 [200 - 232]
  33. AHGFALRNKRH
  34. >U1_8 [219 - 314]
  35. EINATDALVSEHEWFDVRVPDNNCAVAFNVSM
  36. >U1_9 [226 - 330]
  37. TPLTRSFPNMNGSMYAFQTITVRWPSTCRCKICCT
  38. >U1_10 [287 - 364]
  39. LCGGLQRVDVKSAARRTWPLCSPSRQ
  40. >U1_11 [368 - 403]
  41. IPSQNFLRLRRL
  42. >U1_12 [318 - 536]
  43. NLLHVERGRCVRHHVSEFQAKTFCDYVACSGFRALASVFIPVYPPCIASRTHVERQDMVV
  44. EHFHAHTIHGITQ
  45. >U1_13 [407 - 559]
  46. WLQSFGLCIYSSVSTMHRQSHACRTARYGGRTLPCAYHSWHHAVGASGSSR
  47. >U1_14 [334 - 606]
  48. NVAVVFAITSVNSKPKLSAITSLVVASELWPLYLFQCIHHASPVARMSNGKIWWSNTSMR
  49. IPFMASRSRGFWVISLIGTGLLVSTTTSAIR
  50. >U1_15 [581 - 673]
  51. FQPRLQQSDRSSPRQSTVRRRSALPSASDTQ
  52. >U1_16 [677 - 718]
  53. ESRYAVYEYFLPDT
  54. >U1_17 [540 - 731]
  55. GLLGHLVNRNGAVSFNHDFSNPIGVLHASRQFVEDQRCHLLQTPSRNLDTPCTSIFSQIH
  56. DIPL
  57. >U1_18 [722 - 826]
  58. YPVVTGVGTAIFSGLGQLASPFHNPSSNAYFPARP
  59. >U1_19 [610 - 843]
  60. EFSTPVDSSSKISAAICFRHPVGISIRRVRVFSPRYMISRCDGCRYSNFLRPWTTCISLS
  61. QPFFKCIFSRSALSRCSS
  62. >U1_20 [735 - 872]
  63. RVSVQQFSQALDNLHLPFTTLLQMHIFPLGPESLFQLTNTHLLPHH
  64. >U1_21 [847 - 894]
  65. RIHTSFHTTDIPLDIV
  66. >U1_22 [830 - 940]
  67. VVVPADEYTPPSTPLTYRWTLYDTIGLSYVVASSCLG
  68. >U1_23 [944 - 976]
  69. FATASTSSRAL
  70. >U1_24 [898 - 1038]
  71. HDRSFLRRGFFLPRMICNCFNFISSSLTSSRNSISWKRRSFLALFGS
  72. >U1_25 [980 - 1042]
  73. LRPATRSVGSDVHFLPCSDRS
  74. >U1_26 [1084 - 1152]
  75. VSVFVTSGAFTHWNGVTGSSSVP
  76. >U1_27 [876 - 1193]
  77. HTAGHCMTRSVFLTSWLLLASDDLQLLQLHLELFDFVPQLDQLEATFISCLVRIVVEFLL
  78. LELRLCRLMSQRIRHIWCIYPLEWGYRQQFRAIVSDIVVHCAQKHL
  79. >U1_28 [1156 - 1194]
  80. SPISSSIALRSTS
  81. >U1_29 [1061 - 1195]
  82. VEVVQTHESAYSSHLVHLPTGMGLQAAVPCHSLRYRRPLRSEAPP
  83. >U1_30 [1180 - 1133] (REVERSE SENSE)
  84. AQWTTISETMARNCCL
  85. >U1_31 [1194 - 1081] (REVERSE SENSE)
  86. GGASERNGRRYRRLWHGTAACNPIPVGKCTRCDEYADS
  87. >U1_32 [1077 - 1018] (REVERSE SENSE)
  88. VCTTSTQEEETQLRSEQGKK
  89. >U1_33 [1084 - 1001] (REVERSE SENSE)
  90. LMSLHNLNSRRRNSTTIRTRQEMNVASN
  91. >U1_34 [997 - 965] (REVERSE SENSE)
  92. SSCGTKSKSSR
  93. >U1_35 [1014 - 916] (REVERSE SENSE)
  94. TSLPTDRVAGRSQRARDEVEAVANHPRQEEATT
  95. >U1_36 [955 - 803] (REVERSE SENSE)
  96. SSCKSSEARRSHDVRKTDRVIQCPAVCQWCGRRCVFVSWNNDSGPSGKICI
  97. >U1_37 [912 - 790] (REVERSE SENSE)
  98. ERPIVSYNVQRYVSGVEGGVYSSAGTTTQGRAGKYAFEEGL
  99. >U1_38 [799 - 761] (REVERSE SENSE)
  100. RRVVKGRCKLSKA
  101. >U1_39 [757 - 665] (REVERSE SENSE)
  102. ENCCTDTRHNGISCIWEKILVHGVSRFLLGV
  103. >U1_40 [786 - 598] (REVERSE SENSE)
  104. KGDASCPRPEKIAVPTPVTTGYHVSGRKYSYTAYRDSYWVSEADGSADLRRTVDWRGELL
  105. SDC
  106. >U1_41 [643 - 554] (REVERSE SENSE)
  107. SSTNCRLAWRTPIGLLKSWLKLTAPFRLTR
  108. >U1_42 [528 - 436] (REVERSE SENSE)
  109. CHEWYAHGSVRPPYLAVRHACDWRCMVDTLE
  110. >U1_43 [520 - 395] (REVERSE SENSE)
  111. MVCAWKCSTTISCRSTCVRLAMHGGYTGINTEAKALKPLQAT
  112. >U1_44 [411 - 364] (REVERSE SENSE)
  113. SHYKRRNRRKFWLGIH
  114. >U1_45 [391 - 359] (REVERSE SENSE)
  115. SQKVLAWNSLT
  116. >U1_46 [360 - 304] (REVERSE SENSE)
  117. RDGEHNGHVLRAADFTSTR
  118. >U1_47 [355 - 218] (REVERSE SENSE)
  119. WRTQRPRSTCSRFYIDTLKATAQLLSGTRTSNHSCSETSASVAFIS
  120. >U1_48 [300 - 190] (REVERSE SENSE)
  121. RPPHSYCLERVHRTIHVRKRARQWRLFLRAKPCAHQT
  122. >U1_49 [214 - 107] (REVERSE SENSE)
  123. SKAMCSSNLMTKIPCPPGRVQSQLECRPARSSRLTF
  124. >U1_50 [183 - 91] (REVERSE SENSE)
  125. PKFHVLQGGCSPNSNVDLRDHHASLFRSEAE
  126. >U1_51 [64 - 32] (REVERSE SENSE)
  127. PILWRARCLRI
  128. >U1_52 [1193 - 3] (REVERSE SENSE)
  129. EVLLSAMDDDIGDYGTELLPVTPFQWVNAPDVTNTLTHESAQPQLKKKKLNYDPNKARNE
  130. RRFQLIELRDEVKELEMKLKQLQIIRGKKKPRRKKDRSCHTMSSGMSVVWKEVCIRQLEQ
  131. RLRAERENMHLKKGCEREMQVVQGLRKLLYRHPSQRDIMYLGENTRTRRIEIPTGCLKQM
  132. AALIFDELSTGVENSYRIAEVVVETNSPVPINEMTQKPLLRDAMNGMRMEVFDHHILPFD
  133. MRATGDAWWIHWNKYRGQSSEATTSDVIAESFGLEFTDVMANTTATFYVQQILHRHVEGH
  134. RTVIVWNAYIEPFMFGNERVSGVYFLEQSHVLIKPDDQNSMSSREGAVPTRMSTCEIITP
  135. HFLDPKLSDDPKMADLTDFVASSLSSNIMMRNEKIEY
  136. >U1_53 [69 - 1] (REVERSE SENSE)
  137. SDRFCGELAVFEYNDAQRKDRVL
  138. >U2_1 [2 - 52]
  139. FTEPTSIDELLASRFPQ
  140. >U2_2 [3 - 56]
  141. LQSQLLSMSSSHHVSLNK
  142. >U2_3 [56 - 154]
  143. ISTSAGSMYFRAKCSPFRVGCAKATRFLFTCMP
  144. >U2_4 [28 - 159]
  145. APRITFPSINKHLGWFHVFSRKVQPISCRLREGNEVLVHMHAVN
  146. >U2_5 [163 - 213]
  147. LFAHDGHHSGRNAFPAE
  148. >U2_6 [60 - 245]
  149. APRLVPCIFAQSAAHFVSAARRQRGSCSHACRKLTFRARRPPFGSQCFSCGMRGAPKSGR
  150. CQ
  151. >U2_7 [217 - 258]
  152. GVHPNLADANNGGF
  153. >U2_8 [249 - 356]
  154. RRVLNRQTQSQHHSQLRRSPRPSSTAQSSSKWSCPE
  155. >U2_9 [158 - 400]
  156. IDFSRTTATIRVAMLFLRNEGCTQIWQMPITAGFESADAVTAPFAATEVSASEFDCTIQF
  157. EVVLSRVKASVMRSVLTHPTT
  158. >U2_10 [262 - 441]
  159. IGRRSHSTIRSYGGLRVRVRLHNPVRSGLVQSKGFRDALRIDTSNDLMVLNVDKVAALQK
  160. >U2_11 [387 - 443]
  161. HIQRLDGPECRQSGCAAET
  162. >U2_12 [443 - 297] (REVERSE SENSE)
  163. RFCSAATLSTFRTIKSLDVSIRSASRKPLLWTRPLRTGLCSRTRTRRPP
  164. >U2_13 [275 - 144] (REVERSE SENSE)
  165. LRLPIQNPPLLASARFGCTPHSAGKALRPEWWPSCAKSQFTACM
  166. >U2_14 [441 - 52] (REVERSE SENSE)
  167. FLQRSHFVYIQDHQVVGCVNTERITEAFTLDKTTSNWIVQSNSDAETSVAANGAVTASAD
  168. SKPAVIGICQIWVHPSFRRKSIATRMVAVVREKSIYGMHVNKNLVAFAQPTRNGLHFARK
  169. YMEPAEVLIY
  170. >U2_15 [442 - 41] (REVERSE SENSE)
  171. VSAAQPLCLHSGPSSRWMCQYGAHHGSLYSGQDHFELDCAVELGRGDLRSCEWCCDCVCR
  172. FKTRRYWHLPDLGAPLIPQEKHCDPNGGRRARKVNLRHACEQEPRCLRAADTKWAALCAK
  173. IHGTSRGAYLLRET
  174. >U2_16 [140 - 21] (REVERSE SENSE)
  175. TRTSLPSRSRHEMGCTLRENTWNQPRCLFIEGNVMRGAHR
  176. >U2_17 [37 - 2] (REVERSE SENSE)
  177. CEELIDRSWLCK
  178. >U2_18 [48 - 1] (REVERSE SENSE)
  179. GKRDARSSSIEVGSVN
复制代码
实战分享：从技术角度谈机器学习入门| 【大话IT】RadonDB低门槛向MySQL集群下战书 | ChinaUnix打赏功能已上线！ | 新一代分布式关系型数据库RadonDB知多少？
清泉一边

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1
羊年新春福章 日期:2015-04-28 20:40:58
14楼 [报告]
发表于 2014-10-30 22:27 |只看该作者
  1. #!/usr/bin/perl
  2. use strict;
  3. my (%hash,%h);
  4. my $ref = {};
  5. $/ = ">";<DATA>;$/ = "\n";
  6. while (<DATA>){
  7. my ($name,$non) = split /_/;
  8. $/ = ">";
  9. my $seq = <DATA>;
  10. $seq =~ s/>$//g;
  11. $seq =~ s/\n|\r//g;
  12. $/ = "\n";
  13. my $length = length $seq;
  14. push @{$h{$name}},$length;
  15. $ref->{$name}->{$seq}->{$length}=1;
  16. }
  17. foreach my $h(keys %h){
  18. print ">$h\n";
  19. my $max = 0;
  20.          for my $out (@{$h{$h}}){
  21.              if ($out > $max){
  22.              $max = $out;
  23.              }
  24.            }
  25.         foreach my $k(keys %{$ref}) {
  26.                        foreach my $seq (keys %{$ref->{$k}})  {
  27.                                  foreach my $n (keys %{$ref->{$k}->{$seq}}) {
  28.                                  print "$seq\n" if exists $ref->{$k}->{$seq}->{$max};
  29.                                  }
  30.                        }
  31.                }
  32. }




  37. __DATA__
  38. >U1_1 [3 - 104]
  39. VLDLFVAHHYIRRQRARHKIGQISHFWVITQLRI
  40. >U1_2 [1 - 111]
  41. KYSIFSLRIIIFEDSELATKSVRSAIFGSSLSFGSKK
  42. >U1_3 [2 - 118]
  43. STRSFRCASLYSKTASSPQNRSDQPFLGHHSASDLKSEA
  44. >U1_4 [125 - 193]
  45. SRRSTFELGLHPPWRTWNFGHQV
  46. >U1_5 [108 - 215]
  47. KVRRDDLAGRHSSWDCTLPGGHGILVIRFDEHMALL
  48. >U1_6 [115 - 222]
  49. GVMISQVDIRVGTAPSLEDMEFWSSGLMSTWLCSKK
  50. >U1_7 [200 - 232]
  51. AHGFALRNKRH
  52. >U1_8 [219 - 314]
  53. EINATDALVSEHEWFDVRVPDNNCAVAFNVSM
  54. >U1_9 [226 - 330]
  55. TPLTRSFPNMNGSMYAFQTITVRWPSTCRCKICCT
  56. >U1_10 [287 - 364]
  57. LCGGLQRVDVKSAARRTWPLCSPSRQ
  58. >U1_11 [368 - 403]
  59. IPSQNFLRLRRL
  60. >U1_12 [318 - 536]
  61. NLLHVERGRCVRHHVSEFQAKTFCDYVACSGFRALASVFIPVYPPCIASRTHVERQDMVV
  62. EHFHAHTIHGITQ
  63. >U1_13 [407 - 559]
  64. WLQSFGLCIYSSVSTMHRQSHACRTARYGGRTLPCAYHSWHHAVGASGSSR
  65. >U1_14 [334 - 606]
  66. NVAVVFAITSVNSKPKLSAITSLVVASELWPLYLFQCIHHASPVARMSNGKIWWSNTSMR
  67. IPFMASRSRGFWVISLIGTGLLVSTTTSAIR
  68. >U1_15 [581 - 673]
  69. FQPRLQQSDRSSPRQSTVRRRSALPSASDTQ
  70. >U1_16 [677 - 718]
  71. ESRYAVYEYFLPDT
  72. >U1_17 [540 - 731]
  73. GLLGHLVNRNGAVSFNHDFSNPIGVLHASRQFVEDQRCHLLQTPSRNLDTPCTSIFSQIH
  74. DIPL
  75. >U1_18 [722 - 826]
  76. YPVVTGVGTAIFSGLGQLASPFHNPSSNAYFPARP
  77. >U1_19 [610 - 843]
  78. EFSTPVDSSSKISAAICFRHPVGISIRRVRVFSPRYMISRCDGCRYSNFLRPWTTCISLS
  79. QPFFKCIFSRSALSRCSS
  80. >U1_20 [735 - 872]
  81. RVSVQQFSQALDNLHLPFTTLLQMHIFPLGPESLFQLTNTHLLPHH
  82. >U1_21 [847 - 894]
  83. RIHTSFHTTDIPLDIV
  84. >U1_22 [830 - 940]
  85. VVVPADEYTPPSTPLTYRWTLYDTIGLSYVVASSCLG
  86. >U1_23 [944 - 976]
  87. FATASTSSRAL
  88. >U1_24 [898 - 1038]
  89. HDRSFLRRGFFLPRMICNCFNFISSSLTSSRNSISWKRRSFLALFGS
  90. >U1_25 [980 - 1042]
  91. LRPATRSVGSDVHFLPCSDRS
  92. >U1_26 [1084 - 1152]
  93. VSVFVTSGAFTHWNGVTGSSSVP
  94. >U1_27 [876 - 1193]
  95. HTAGHCMTRSVFLTSWLLLASDDLQLLQLHLELFDFVPQLDQLEATFISCLVRIVVEFLL
  96. LELRLCRLMSQRIRHIWCIYPLEWGYRQQFRAIVSDIVVHCAQKHL
  97. >U1_28 [1156 - 1194]
  98. SPISSSIALRSTS
  99. >U1_29 [1061 - 1195]
  100. VEVVQTHESAYSSHLVHLPTGMGLQAAVPCHSLRYRRPLRSEAPP
  101. >U1_30 [1180 - 1133] (REVERSE SENSE)
  102. AQWTTISETMARNCCL
  103. >U1_31 [1194 - 1081] (REVERSE SENSE)
  104. GGASERNGRRYRRLWHGTAACNPIPVGKCTRCDEYADS
  105. >U1_32 [1077 - 1018] (REVERSE SENSE)
  106. VCTTSTQEEETQLRSEQGKK
  107. >U1_33 [1084 - 1001] (REVERSE SENSE)
  108. LMSLHNLNSRRRNSTTIRTRQEMNVASN
  109. >U1_34 [997 - 965] (REVERSE SENSE)
  110. SSCGTKSKSSR
  111. >U1_35 [1014 - 916] (REVERSE SENSE)
  112. TSLPTDRVAGRSQRARDEVEAVANHPRQEEATT
  113. >U1_36 [955 - 803] (REVERSE SENSE)
  114. SSCKSSEARRSHDVRKTDRVIQCPAVCQWCGRRCVFVSWNNDSGPSGKICI
  115. >U1_37 [912 - 790] (REVERSE SENSE)
  116. ERPIVSYNVQRYVSGVEGGVYSSAGTTTQGRAGKYAFEEGL
  117. >U1_38 [799 - 761] (REVERSE SENSE)
  118. RRVVKGRCKLSKA
  119. >U1_39 [757 - 665] (REVERSE SENSE)
  120. ENCCTDTRHNGISCIWEKILVHGVSRFLLGV
  121. >U1_40 [786 - 598] (REVERSE SENSE)
  122. KGDASCPRPEKIAVPTPVTTGYHVSGRKYSYTAYRDSYWVSEADGSADLRRTVDWRGELL
  123. SDC
  124. >U1_41 [643 - 554] (REVERSE SENSE)
  125. SSTNCRLAWRTPIGLLKSWLKLTAPFRLTR
  126. >U1_42 [528 - 436] (REVERSE SENSE)
  127. CHEWYAHGSVRPPYLAVRHACDWRCMVDTLE
  128. >U1_43 [520 - 395] (REVERSE SENSE)
  129. MVCAWKCSTTISCRSTCVRLAMHGGYTGINTEAKALKPLQAT
  130. >U1_44 [411 - 364] (REVERSE SENSE)
  131. SHYKRRNRRKFWLGIH
  132. >U1_45 [391 - 359] (REVERSE SENSE)
  133. SQKVLAWNSLT
  134. >U1_46 [360 - 304] (REVERSE SENSE)
  135. RDGEHNGHVLRAADFTSTR
  136. >U1_47 [355 - 218] (REVERSE SENSE)
  137. WRTQRPRSTCSRFYIDTLKATAQLLSGTRTSNHSCSETSASVAFIS
  138. >U1_48 [300 - 190] (REVERSE SENSE)
  139. RPPHSYCLERVHRTIHVRKRARQWRLFLRAKPCAHQT
  140. >U1_49 [214 - 107] (REVERSE SENSE)
  141. SKAMCSSNLMTKIPCPPGRVQSQLECRPARSSRLTF
  142. >U1_50 [183 - 91] (REVERSE SENSE)
  143. PKFHVLQGGCSPNSNVDLRDHHASLFRSEAE
  144. >U1_51 [64 - 32] (REVERSE SENSE)
  145. PILWRARCLRI
  146. >U1_52 [1193 - 3] (REVERSE SENSE)
  147. EVLLSAMDDDIGDYGTELLPVTPFQWVNAPDVTNTLTHESAQPQLKKKKLNYDPNKARNE
  148. RRFQLIELRDEVKELEMKLKQLQIIRGKKKPRRKKDRSCHTMSSGMSVVWKEVCIRQLEQ
  149. RLRAERENMHLKKGCEREMQVVQGLRKLLYRHPSQRDIMYLGENTRTRRIEIPTGCLKQM
  150. AALIFDELSTGVENSYRIAEVVVETNSPVPINEMTQKPLLRDAMNGMRMEVFDHHILPFD
  151. MRATGDAWWIHWNKYRGQSSEATTSDVIAESFGLEFTDVMANTTATFYVQQILHRHVEGH
  152. RTVIVWNAYIEPFMFGNERVSGVYFLEQSHVLIKPDDQNSMSSREGAVPTRMSTCEIITP
  153. HFLDPKLSDDPKMADLTDFVASSLSSNIMMRNEKIEY
  154. >U1_53 [69 - 1] (REVERSE SENSE)
  155. SDRFCGELAVFEYNDAQRKDRVL
  156. >U2_1 [2 - 52]
  157. FTEPTSIDELLASRFPQ
  158. >U2_2 [3 - 56]
  159. LQSQLLSMSSSHHVSLNK
  160. >U2_3 [56 - 154]
  161. ISTSAGSMYFRAKCSPFRVGCAKATRFLFTCMP
  162. >U2_4 [28 - 159]
  163. APRITFPSINKHLGWFHVFSRKVQPISCRLREGNEVLVHMHAVN
  164. >U2_5 [163 - 213]
  165. LFAHDGHHSGRNAFPAE
  166. >U2_6 [60 - 245]
  167. APRLVPCIFAQSAAHFVSAARRQRGSCSHACRKLTFRARRPPFGSQCFSCGMRGAPKSGR
  168. CQ
  169. >U2_7 [217 - 258]
  170. GVHPNLADANNGGF
  171. >U2_8 [249 - 356]
  172. RRVLNRQTQSQHHSQLRRSPRPSSTAQSSSKWSCPE
  173. >U2_9 [158 - 400]
  174. IDFSRTTATIRVAMLFLRNEGCTQIWQMPITAGFESADAVTAPFAATEVSASEFDCTIQF
  175. EVVLSRVKASVMRSVLTHPTT
  176. >U2_10 [262 - 441]
  177. IGRRSHSTIRSYGGLRVRVRLHNPVRSGLVQSKGFRDALRIDTSNDLMVLNVDKVAALQK
  178. >U2_11 [387 - 443]
  179. HIQRLDGPECRQSGCAAET
  180. >U2_12 [443 - 297] (REVERSE SENSE)
  181. RFCSAATLSTFRTIKSLDVSIRSASRKPLLWTRPLRTGLCSRTRTRRPP
  182. >U2_13 [275 - 144] (REVERSE SENSE)
  183. LRLPIQNPPLLASARFGCTPHSAGKALRPEWWPSCAKSQFTACM
  184. >U2_14 [441 - 52] (REVERSE SENSE)
  185. FLQRSHFVYIQDHQVVGCVNTERITEAFTLDKTTSNWIVQSNSDAETSVAANGAVTASAD
  186. SKPAVIGICQIWVHPSFRRKSIATRMVAVVREKSIYGMHVNKNLVAFAQPTRNGLHFARK
  187. YMEPAEVLIY
  188. >U2_15 [442 - 41] (REVERSE SENSE)
  189. VSAAQPLCLHSGPSSRWMCQYGAHHGSLYSGQDHFELDCAVELGRGDLRSCEWCCDCVCR
  190. FKTRRYWHLPDLGAPLIPQEKHCDPNGGRRARKVNLRHACEQEPRCLRAADTKWAALCAK
  191. IHGTSRGAYLLRET
  192. >U2_16 [140 - 21] (REVERSE SENSE)
  193. TRTSLPSRSRHEMGCTLRENTWNQPRCLFIEGNVMRGAHR
  194. >U2_17 [37 - 2] (REVERSE SENSE)
  195. CEELIDRSWLCK
  196. >U2_18 [48 - 1] (REVERSE SENSE)
  197. GKRDARSSSIEVGSVN
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