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无法加载 Bio::DB::Sam模块 [复制链接]

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发表于 2017-12-07 11:04 |显示全部楼层
Can't locate loadable object for module Bio:B::Sam in @INC (@INC contains:


Bio-SamTools-1.43   手动编译源码安装过程中报错

报错信息:
Building Bio-SamTools
cc -I/home/tanggongcheng/workdir/software/samtools_build/lib -Ic_bin -I/home/tanggongcheng/workdir/software/PERL/Setup/lib/perl5/5.26.1/x86_64-linux/CORE -DVERSION="1.43" -DXS_VERSION="1.43" -fPIC -D_IOLIB=2 -D_FILE_OFFSET_BITS=64 -Wformat=0 -c -fwrapv -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -O2 -o lib/Bio/DB/Sam.o lib/Bio/DB/Sam.c
lib/Bio/DB/Sam.xs: In function ‘XS_Bio__DB__Bam__Alignment_l_aux’:
lib/Bio/DB/Sam.xs:575:8: error: ‘bam1_t’ has no member named ‘l_aux’
       b->l_aux = SvIV(ST(1));
        ^
lib/Bio/DB/Sam.xs:576:13: error: ‘bam1_t’ has no member named ‘l_aux’
     RETVAL=b->l_aux;
             ^
lib/Bio/DB/Sam.c: In function ‘XS_Bio__DB__Bam__Index_coverage’:
lib/Bio/DB/Sam.xs:1008:20: warning: ignoring return value of ‘bgzf_seek’, declared with attribute warn_unused_result [-Wunused-result]
           bgzf_seek(bfp,0,0);
                    ^
In file included from lib/Bio/DB/Sam.xs:28:0:
lib/Bio/DB/Sam.c: In function ‘XS_Bio__DB__Bam_seek’:
/home/tanggongcheng/workdir/software/samtools_build/lib/bam.h:57:41: warning: ignoring return value of ‘bgzf_seek’, declared with attribute warn_unused_result [-Wunused-result]
#define bam_seek(fp, pos, dir) bgzf_seek(fp, pos, dir)
                                         ^
lib/Bio/DB/Sam.xs:380:5: note: in expansion of macro ‘bam_seek’
     bam_seek(bam,pos,dir);
     ^
lib/Bio/DB/Sam.c: In function ‘XS_Bio__DB__Bam_header_write’:
lib/Bio/DB/Sam.xs:356:16: warning: ignoring return value of ‘bgzf_seek’, declared with attribute warn_unused_result [-Wunused-result]
       bgzf_seek(bam,0,0);
                ^
error building lib/Bio/DB/Sam.o from 'lib/Bio/DB/Sam.c' at /home/tanggongcheng/workdir/software/PERL/Setup/lib/perl5/5.26.1/ExtUtils/CBuilder/Base.pm line 174.



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