如何将A文件根据B文件得到C文件

wd_my

A文件：3列，第一列是序列ID，第二列是序列长度，第三列是序列注释信息

Chr01_9654239_9660689        645 GAG_copia/GAG_tork/AP_copia/INT_tat/INT_17_6/INT_codi_d/INT_retrofit/INT_copia/INT_sire/INT_1731/INT_oryco/RT_hydra/RT_pCretro/RT_copia/RNaseH_codi_c /RNaseH_retrofit/RNaseH_oryco/RNaseH_copia/RNaseH_codi_d
Chr01_10815525_10825383 9859 RNaseH_gypsy/RNaseH_galadriel/RNaseH_gmr1/RNaseH_17_6/RNaseH_pyret/RNaseH_maggy/RNaseH_micropia_mdg3/RNaseH_v_clade/RNaseH_osvaldo/RNaseH_b_clade/RNaseH_TF/
RNaseH_a_clade/RNaseH_pyggy/INT_osvaldo/INT_cer2_3/INT_crm/INT_reina
Chr01_11277413_11279136        1724        RNaseH_tork/RNaseH_retrofit/RNaseH_oryco/RNaseH_sire/RNaseH_1731/RNaseH_copia/RNaseH_codi_d/RNaseH_codi_c
Chr01_13549455_13553995        4541 GAG_sire/GAG_oryco/AP_oryco/AP_copia/INT_oryco/INT_hydra/INT_copia/INT_1731/INT_retrofit/INT_tork/INT_sire/INT_csrn1/INT_pseudovirus/INT_pCretro/INT_codi_d/
RT_tork/RT_oryco/RT_pCretro/RT_1731/RT_hydra/RT_sire/RT_copia/RT_retrofit/RT_codi_d/RT_codi_c/RT_galea/RT_pseudovirus/RNaseH_copia/RNaseH_oryco/RNaseH_sire/RNaseH_retrofit/RNaseH_tork/RNaseH_1731/RNaseH_pCretro/RNaseH_codi_d/RNaseH_hydra
Chr01_13578874_13583841        4968 GAG_retrofit/AP_retrofit/INT_tork/INT_pseudovirus/INT_1731/INT_oryco/INT_copia/INT_retrofit/RT_codi_c/RT_1731/RT_pseudovirus/RT_oryco/
RT_codi_d/RT_copia/RT_tork/RT_retrofit/RT_sire/RT_hydra/RT_pCretro/RNaseH_codi_I/RNaseH_pseudovirus/RNaseH_tork/RNaseH_codi_d/RNaseH_1731/RNaseH_hydra/RNaseH_sire/RNaseH_pCretro/RNaseH_oryco/RNaseH_retrofit/RNaseH_copia
Chr01_13708617_13713687        5071        GAG_reina/GAG_del/AP_galadriel/AP_del/AP_reina/INT_del/RT_alpharetroviridae/RT_betaretroviridae/RT_cavemovirus/RT_caulimovirus/RT_soymovirus/RT_tat/RT_gammaretroviridae/
RT_TF/RT_spumaretroviridae/RT_csrn1/RT_b_clade/RT_a_clade/RT_epsilonretroviridae/RT_galadriel/RT_v_clade/RT_gmr1/RT_gypsy/RT_osvaldo/RT_maggy/RT_del/RT_17_6/RT_412_mdg1/RT_micropia_mdg3/RT_crm/RT_pyggy/RT_athila/RT_reina/RT_pyret/RT_badnavirus/RNaseH_csrn1/RNaseH_b_clade/RNaseH_caulimovirus/RNaseH_maggy/RNaseH_reina/RNaseH_del/RNaseH_athila/RNaseH_crm/RNaseH_galadriel/RNaseH_osvaldo/RNaseH_pyggy/RNaseH_TF/RNaseH_pyret/RNaseH_v_clade/RNaseH_gmr1/RNaseH_a_clade/RNaseH_17_6/RNaseH_gypsy/RNaseH_micropia_mdg3/INT_csrn1/INT_b_clade/INT_athila/INT_epsilonretroviridae/INT_pyggy/INT_pyret/INT_maggy/INT_micropia_mdg3/INT_tat/INT_spumaretroviridae/INT_gmr1/INT_osvaldo/INT_cer2_3/INT_412_mdg1/INT_gammaretroviridae/INT_v_clade/INT_crm/INT_TF/INT_reina


B文件
GAG/AP/RT/RNaseH/INT        Gypsy
GAG/AP/INT/RT/RNaseH        Copia
GAG/AP/RT/INT/RNaseH        Bel




C文件
Chr01_9654239_9660689        645 Copia    ###包含GAG_copia/AP_copia/INT_copia/RT_copia/RNaseH_copia，满足GAG/AP/INT/RT/RNaseH的顺序
Chr01_13549455_13553995        4541 Copia  ###包含GAG_oryco/AP_oryco/INT_oryco/RT_oryco/RNaseH_oryco，满足GAG/AP/INT/RT/RNaseH的顺序
Chr01_13578874_13583841        4968 Copia  ###包含GAG_retrofit/AP_retrofit/INT_retrofit/RT_retrofit/RNaseH_retrofit，满足GAG/AP/INT/RT/RNaseH的顺序
Chr01_13708617_13713687        5071        Gypsy  ###包含GAG_reina/AP_reina/RT_reina/RNaseH_reina/INT_reina（满足GAG/AP/RT/RNaseH/INT的顺序）及GAG_del/AP_del/INT_del/RT_del/RNaseH_del（满足GAG/AP/INT/RT/RNaseH的顺序），但是GAG_reina在前，即为Gypsy


请教：如何根据B文件将A文件处理得到C文件？

expert1

要看明白这种生物学的shell问题，还真的比较难啊。

wd_my

回复 2# expert1

真的是这样

expert1

不是题有多难，是理解你们这些人的意图比较难。

wd_my

回复 4# expert1

可能是我太着急了，没说明白
我的目的是将A文件根据B文件进行归类。A文件中每行的第三列是以/分隔符，多个xxx_xxx形式组成。条件是_之后的xxx一样，_之前xxx的满足B文件第一列的顺序，即属于B文件中第二列的类别。（可能A文件某行中第三列符合多行B文件第一列的顺序，取先符合条件的）


不管是否能解答，谢谢大神的回复了